PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001080.1_g880.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SBP

Protein Properties

Length: 217aa MW: 25097.5 Da PI: 5.2162

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001080.1_g880.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	121.6	3.6e-38	77	149	6	78
T-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 6 gCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C+adls ++eyhrrh+vCe hsk+pvv+v+g+++rfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+++ Pav_sc0001080.1_g880.1.mk 77 DCKADLSLCREYHRRHRVCELHSKTPVVTVRGEQKRFCQQCSRFHSLVEFDEVKRSCRKRLNGHNQRRRKPKP 149 7*********************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence
MCFSSSLPKP CLCVSLSSLG KEEIREEGRV FVVVVMEWDF KDFACWDSTD ELELELELEL 60 ELEQQKQEQD SDLAALDCKA DLSLCREYHR RHRVCELHSK TPVVTVRGEQ KRFCQQCSRF 120 HSLVEFDEVK RSCRKRLNGH NQRRRKPKPE SLYFTSNFLS GYKGQLPDSR LQMNGSFAEF 180 SCSHDAEDKA ANPEMMFLMG PDGFLDNGAQ MLPILLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-40	SBP family protein