PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001080.1_g960.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 247aa MW: 28016.8 Da PI: 9.2711

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001080.1_g960.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00032	95	117	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H Pav_sc0001080.1_g960.1.mk 95 SCSVCSRVYPTSRLLSIHVSEaH 117 6*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MASMDVEGPQ LGFPHWKPLR RRFGPESPFF ASGNIERELL AKQLALDLTE DERHQLRNMV 60 DEEGRGVFCT IVGCGARLSS LEDFEDHYNA RHTASCSVCS RVYPTSRLLS IHVSEAHDSF 120 FQAKVARGYP MYECLVEGCD LKLKNYKSRQ QHLVDKHKFP TSFEFFKKAQ PSKKQRQKNQ 180 RKQAIPKKAD ASCMEVENET IDSLVSAVSK LSTSDSSPSS ISFGRRPTRG LTFVPRAVQR 240 EKKPDST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	179	KKQRQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	1e-105	C2H2 family protein