PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001102.1_g230.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 206aa    MW: 23077.8 Da    PI: 7.9072
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001102.1_g230.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.8e-18112162255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+++AeIrdp     k +r++lg+f+t  +Aaka++ a+ kl+g
  Pav_sc0001102.1_g230.1.mk 112 HYRGVRRRP-WGKYAAEIRDP---ArKGTRVWLGTFDTDVDAAKAYDCAAFKLRG 162
                                7********.**********8...4445**********99*************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MHANQLSCSH FKMATHEEQD ESTLELIRQH LLECSLSESE STSPISDPHC YNPQPCNFQT  60
KPETINSPSI KVEPLNLSSP TKGKTTTSDS ATPSSPDDKF QQVSGSGEVP RHYRGVRRRP  120
WGKYAAEIRD PARKGTRVWL GTFDTDVDAA KAYDCAAFKL RGRKAILNFP LEAGQSSQPP  180
VNTARKRRRS VKQEEEELPE TELLKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185189RKRRR
2185190RKRRRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-42ERF family protein