PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001105.1_g260.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 230aa    MW: 25892.2 Da    PI: 9.797
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001105.1_g260.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.27e-213381149
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               krie+k +r+vtfskR++gi+ KA ELSvL +ae+a +++ss+gk++ +
  Pav_sc0001105.1_g260.1.mk 33 KRIEEKNKRHVTFSKRKKGIFNKAAELSVLSGAEIATMVVSSNGKVFCF 81
                               79*******************************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MAKTKIPKSE IADNNNTSDG KKGSKGRRRI EIKRIEEKNK RHVTFSKRKK GIFNKAAELS  60
VLSGAEIATM VVSSNGKVFC FGTPNYDTVI DRYLGHHTAS LLAAAGQPDH RALLHGKTMR  120
SSNKQVENYV EATRHLEAEK ISFKGEENNN NINFVINNNY NSDYEGREGG CGYGWWERPI  180
PIGMMSSLEE LEEYRAALYK LKHNVEVRTN QMIRGSAPSN YYSSLLVMGD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-15M-type_MADS family protein