PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001109.1_g070.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 168aa    MW: 19504.2 Da    PI: 10.174
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001109.1_g070.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.92.9e-2247133190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                +fYn+YAke+GF vr+++s+k+k+++ei ++++vCske  + +   +   ++r+r  tr gCkakl+v k k+g+++v+ +++ 
  Pav_sc0001109.1_g070.1.br  47 EFYNNYAKEAGFIVRINSSRKNKETNEILRKEYVCSKEEVPVKGVGE---KKRRRGITREGCKAKLVVVKLKSGTYVVNLFVEG 127
                                6*************************************999998766...9999****************************** PP

                       FAR1  85 HnHela 90 
                                Hn +l+
  Pav_sc0001109.1_g070.1.br 128 HNRPLT 133
                                **9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    
MIYNYEPIRW QHGLNSDSCD KIYIPQLRDD HKPKSGQRFE SLDDAHEFYN NYAKEAGFIV  60
RINSSRKNKE TNEILRKEYV CSKEEVPVKG VGEKKRRRGI TREGCKAKLV VVKLKSGTYV  120
VNLFVEGHNR PLTSLKRVHL LRSHHTVSNS HKCITQLFST ANIPTHQQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-20FAR1 family protein