PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001112.1_g030.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 295aa    MW: 33210.8 Da    PI: 4.6724
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001112.1_g030.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09170214655
                                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +++ r RR+ri ++ +eL +l+P a     +K++ ae+L+ A +Y+k Lq
  Pav_sc0001112.1_g030.1.mk 170 SIAARERRRRITEKTQELGRLIPGA-----TKMNTAEMLQAAYKYVKFLQ 214
                                677899******************9.....9******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MAMMSSFCPA DDWGSLQFLN PDMNMVSFQA QQEQLAAASG FLGLQDYSLP NFPDYTTCID  60
PLFETYESSS SENFLLPDFH LPTENINLSS LQSPEIFPSL DEYGCLYQQN PKRQKFGVCS  120
FFNAYDDQFL QPQLLAPTPS PQTQIQQQPS YECAKMNKPN GGAVTLSAQS IAARERRRRI  180
TEKTQELGRL IPGATKMNTA EMLQAAYKYV KFLQAQVSVL KLMTDSPVHQ IFAKIFKQEK  240
KDLQAVASPI VQEKLYSEEM CLVSKEFVQV LANDHDIESK PLLKDSVAQL LQTNG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.12e-21bHLH family protein