PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001169.1_g190.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 194aa MW: 21651.7 Da PI: 8.4955

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001169.1_g190.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	69.2	9.1e-22	105	172	33	100
DUF260 33 vhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++k+FGasnv++ll +lp ++r +a+ s+ yeA+ar++dP+yG+v++i++lqqq+ +l+a+la lk++ Pav_sc0001169.1_g190.1.mk 105 IKKVFGASNVSRLLVHLPLSDRCKAAMSISYEAQARIQDPIYGCVSHIFALQQQVVNLQAQLAFLKDQ 172 79*************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
PTVSLFLSLF LSFLFLSLSL SFLLLFFPCA DDLAMPLKEA QIPFKIHIVK DHDMKERLCL 60 EVERLGLSAV IMGSRGGEAR AQCRMMTMVP VLVVLLLLLL LLLRIKKVFG ASNVSRLLVH 120 LPLSDRCKAA MSISYEAQAR IQDPIYGCVS HIFALQQQVV NLQAQLAFLK DQAAQSFVNG 180 SNPNQAAQSW NYEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	1e-25	LBD family protein