PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001179.1_g010.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 158aa    MW: 18280.4 Da    PI: 7.0233
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001179.1_g010.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.35e-13821313891
                       FAR1  38 egkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                                 g+ +++    ++ +++r++ r gCka+l +k+++dgk++v++++ eHnH+l+p
  Pav_sc0001179.1_g010.1.br  82 RGFYRKK----TTPKKKREQRRFGCKAMLGIKLNRDGKYVVKNFVAEHNHDLVP 131
                                4444443....45689999********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    
MQAHTATVLM DHEEDEFRAT YSNDGKESVD CIHLDSDSES LDLLDHNGQI EELTRKFGDV  60
PTLGMSFNNE QEAYQYYNSY ARGFYRKKTT PKKKREQRRF GCKAMLGIKL NRDGKYVVKN  120
FVAEHNHDLV PLSSSHLLRS QRTIEPSQVG FINQMHHA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-14FAR1 family protein