PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001181.1_g060.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 378aa MW: 41464.7 Da PI: 7.6412

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001181.1_g060.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.7	3.6e-12	148	193	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 hn+ Er+RR++i+ ++ L++l+P++ K + a++L A+++Ik L Pav_sc0001181.1_g060.1.mk 148 LHNMSERKRRKKIRGKLGALQQLIPNC-----NKSDRASMLDDAIKHIKAL 193 5***********************8.....699************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MTHQVPDWAT TTNTNINTTE EGDSSKSFQY EDFGLLPDSV VPHPQTETET ETDHDYSVWN 60 INTSASGATG AAEDHNHKCF QEIFEFLSNI QLEPTITPNA ILSSDKHFVC DFDKGESSSG 120 LKTTSRFMET KSVSGEGIKP KRTRAAELHN MSERKRRKKI RGKLGALQQL IPNCNKSDRA 180 SMLDDAIKHI KALKLQIPFY VHQMTSMGEG ALYQASNLSM AGMQSTQTPQ FMSYVPMGTS 240 NAYGMGMVNM CYSTTGLPIM SVPSARFNPL QPATAGFPLM SAPGVLPVNP RLQMPMPFVA 300 SQVMPTATIT SRPRNMGQPQ FATDFSHTFN YANQGESSFQ NNTNNAASAD NQRVPIISKK 360 SKVLASHVVT PCSSVSDK

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MTHQVPDWAT TTNTNINTTE EGDSSKSFQY EDFGLLPDSV VPHPQTETET ETDHDYSVWN  60
INTSASGATG AAEDHNHKCF QEIFEFLSNI QLEPTITPNA ILSSDKHFVC DFDKGESSSG  120
LKTTSRFMET KSVSGEGIKP KRTRAAELHN MSERKRRKKI RGKLGALQQL IPNCNKSDRA  180
SMLDDAIKHI KALKLQIPFY VHQMTSMGEG ALYQASNLSM AGMQSTQTPQ FMSYVPMGTS  240
NAYGMGMVNM CYSTTGLPIM SVPSARFNPL QPATAGFPLM SAPGVLPVNP RLQMPMPFVA  300
SQVMPTATIT SRPRNMGQPQ FATDFSHTFN YANQGESSFQ NNTNNAASAD NQRVPIISKK  360
SKVLASHVVT PCSSVSDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	3e-19	bHLH family protein