PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001181.1_g260.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 111aa    MW: 12990 Da    PI: 8.3777
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001181.1_g260.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH482e-152853126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                               +ktelC+ +++tG+C+yG+ C+FaHg
  Pav_sc0001181.1_g260.1.mk 28 FKTELCNKWQETGECPYGEHCQFAHG 53
                               79***********************8 PP
2zf-CCCH21.34.7e-076690125
                               --S---SGGGGTS.--TTTTT-SS-S CS
                    zf-CCCH  1 yktelCrffartG.tCkyGdrCkFaH 25
                               ykte Cr  ++ G  C+yG rC+F H
  Pav_sc0001181.1_g260.1.mk 66 YKTEVCRMVLA-GvACPYGHRCHFRH 90
                               9**********.66**********88 PP
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    
MQQKVYVPAG GRKEQEPLEL EVYNQGMFKT ELCNKWQETG ECPYGEHCQF AHGIEELRPV  60
IRHPRYKTEV CRMVLAGVAC PYGHRCHFRH ALTENEKFMG PNKPRAMKLD R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-53C3H family protein