PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001181.1_g940.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 106aa    MW: 11759 Da    PI: 4.6673
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001181.1_g940.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding353.3e-111348137
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                               rg+W+++Ed++l+d+++++G g+W+t ++  g  +t+
  Pav_sc0001181.1_g940.1.mk 13 RGAWSKQEDLKLIDYIRKHGEGCWRTLPQAAG-LKTP 48
                               89****************************99.7776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    
MRKPCCDKQD TNRGAWSKQE DLKLIDYIRK HGEGCWRTLP QAAGLKTPTN DQPARFGGNN  60
CDQVSDGTSC LEDQSCGHQL PDLNLDLTIT APSSNSEPEN LKEEIL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.15e-20MYB family protein