PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001189.1_g080.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 381aa MW: 43257.9 Da PI: 4.3946

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001189.1_g080.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44.2	2.5e-14	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+i+nk + tfskRr+g++ KA L+ L +a++a+i fs+ +k Pav_sc0001189.1_g080.1.mk 9 KKINNKNYLKATFSKRRKGLFRKATDLCCLSGAQIAIITFSPGNK 53 689999*********************************9876 PP
2	SRF-TF	43.3	4.6e-14	219	262	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i+nk + tfskRr+g++ KA L+ L +a++a+i fs+ +k Pav_sc0001189.1_g080.1.mk 219 KINNKNYLKATFSKRRKGLFRKATDLCCLSGAQIAIITFSPGNK 262 689999999*******************************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MGKRKIDIKK INNKNYLKAT FSKRRKGLFR KATDLCCLSG AQIAIITFSP GNKPFIFGHP 60 SAETVIDRFL GEQASCTADD DDDEGIGPVD GEDGHEDLEA SHDEEDIGSV DAEDSHEDSE 120 AHQEEEKEDE AGGDGEKVSA WWDEPIDENL GLHELKKYKG LLECLKENVA SKLDEMNKRE 180 FYTKDYLAML NSEIEQEIHT RTYISKKKIM GRHKIDIRKI NNKNYLKATF SKRRKGLFRK 240 ATDLCCLSGA QIAIITFSPG NKPFLFGNPS AEAVLDRFLG EQASCTSDDD EEEGLGSTPE 300 DSDHEDLEAS HEESSEIEDV MYEDRVNFWW DEPIDDELGI YELQKYKGLL EALKENVASK 360 LDDMNWREFS TKDFLSMFCN S

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MGKRKIDIKK INNKNYLKAT FSKRRKGLFR KATDLCCLSG AQIAIITFSP GNKPFIFGHP  60
SAETVIDRFL GEQASCTADD DDDEGIGPVD GEDGHEDLEA SHDEEDIGSV DAEDSHEDSE  120
AHQEEEKEDE AGGDGEKVSA WWDEPIDENL GLHELKKYKG LLECLKENVA SKLDEMNKRE  180
FYTKDYLAML NSEIEQEIHT RTYISKKKIM GRHKIDIRKI NNKNYLKATF SKRRKGLFRK  240
ATDLCCLSGA QIAIITFSPG NKPFLFGNPS AEAVLDRFLG EQASCTSDDD EEEGLGSTPE  300
DSDHEDLEAS HEESSEIEDV MYEDRVNFWW DEPIDDELGI YELQKYKGLL EALKENVASK  360
LDDMNWREFS TKDFLSMFCN S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-30	M-type_MADS family protein