PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001196.1_g850.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 116aa    MW: 13339.2 Da    PI: 5.1874
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001196.1_g850.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3314.5e-10692287
                               EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE CS
                         B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkl 84
                               +k lt sd+ ++  + +p + ++    ++++s ++ ++ ++g    We+ +++r+  +  vl+ +GW +Fv+ +gLk+gD +v+  
  Pav_sc0001196.1_g850.1.br  6 EKCLTESDTVSR--FAFPISWLKVLPPVEQGSHEVNFQVTDGigFFWEFCCSIRGANRNPVLQsEGWLKFVNYKGLKVGDKIVLDS 89
                               677877888776..688999996664445555555555544444*******99888888555549******************995 PP

                               -SS CS
                         B3 85 dgr 87
                               + +
  Pav_sc0001196.1_g850.1.br 90 EAN 92
                               533 PP
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    
MAARYEKCLT ESDTVSRFAF PISWLKVLPP VEQGSHEVNF QVTDGIGFFW EFCCSIRGAN  60
RNPVLQSEGW LKFVNYKGLK VGDKIVLDSE ANDFKGTQFR IRAQKLNEEC DQWLDV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.13e-08ARF family protein