PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001205.1_g350.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 223aa    MW: 24437.8 Da    PI: 8.9625
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001205.1_g350.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.12.6e-42441431100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                                +CaaCk+lrr+Ca++C+++pyf  ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lq
  Pav_sc0001205.1_g350.1.mk  44 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQ 127
                                7*********************************************************************************** PP

                     DUF260  85 qqleqlkaelallkee 100
                                qq+++l+ael++++ e
  Pav_sc0001205.1_g350.1.mk 128 QQVQSLQAELNAVRGE 143
                                ***********99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MSREREISDE IGKKIKRETD ASSHHRMGRR HMLGPPGTLN TITPCAACKL LRRRCAQECP  60
FSPYFSPHEP QKFASVHKVF GASNVSKMLM EVPESQRADA ANSLVYEANV RLRDPVYGCM  120
GAISALQQQV QSLQAELNAV RGEILKYKYR EANLLPSNSH HMALFSTSGA VSIASLPQTP  180
QPPPPPPPPP PLPPTSSSSS MYTNQPSTAD YSTLSSENVS FFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.13e-89LBD family protein