PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001215.1_g160.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 589aa MW: 64793.9 Da PI: 7.0357

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001215.1_g160.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.4	1.9e-16	351	397	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Pav_sc0001215.1_g160.1.mk 351 VHNLSERRRRDRINEKMRALQELIPHS-----NKTDKASMLDEAIEYLKSLQ 397 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence
MNSCIPDWNF EADLPLTNQK KPMGPDHELV ELLWRNGQVV LHSQTHRKPS LNPPNESRQV 60 QKQDQQTIRV GGLYGNSSNL IQDEDTSSLI HYPLEDSFDK EFCSHFFSEL PSCDPIEIDK 120 PTKQFEEEKF AKFGASDTPH LVSTAPQPNV KSPAGMGYPA NPMPPPRYQY NNSTEQNQNL 180 GGLGKVVNFS TFATPGKGDR GSSRGKIGGK ESGNLTQGEV KECSVMTVGS SYVGSNQVLN 240 DLDVSRASSN CDGTTGLSVG PFYDNVQKMM PQSETGKTDT LDPTLTSSSG GSGSSFGRGG 300 KQSNVVNSNK RKGRDAEDSE CQSEAAELES AAGNKSAQRS GSSRRSRAAE VHNLSERRRR 360 DRINEKMRAL QELIPHSNKT DKASMLDEAI EYLKSLQMQL QVMWMGTGMA PMMFPAMQHY 420 MSRMGMGMGV GMGMGPPALP SMHNPMHLPR VPLVDQCMNV APATNQAVMC QAPVLNPVDY 480 HNQMQNPAFQ EQYARLMGFH HMHTMSQMQN PAFQEQYARL MGFHHMQTMS QPMNMFRFGS 540 QPMQQNQMTA PTGINSGPLG GGGTANDTLS GKMCKSLHQP LILGHFIDF

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence

MNSCIPDWNF EADLPLTNQK KPMGPDHELV ELLWRNGQVV LHSQTHRKPS LNPPNESRQV  60
QKQDQQTIRV GGLYGNSSNL IQDEDTSSLI HYPLEDSFDK EFCSHFFSEL PSCDPIEIDK  120
PTKQFEEEKF AKFGASDTPH LVSTAPQPNV KSPAGMGYPA NPMPPPRYQY NNSTEQNQNL  180
GGLGKVVNFS TFATPGKGDR GSSRGKIGGK ESGNLTQGEV KECSVMTVGS SYVGSNQVLN  240
DLDVSRASSN CDGTTGLSVG PFYDNVQKMM PQSETGKTDT LDPTLTSSSG GSGSSFGRGG  300
KQSNVVNSNK RKGRDAEDSE CQSEAAELES AAGNKSAQRS GSSRRSRAAE VHNLSERRRR  360
DRINEKMRAL QELIPHSNKT DKASMLDEAI EYLKSLQMQL QVMWMGTGMA PMMFPAMQHY  420
MSRMGMGMGV GMGMGPPALP SMHNPMHLPR VPLVDQCMNV APATNQAVMC QAPVLNPVDY  480
HNQMQNPAFQ EQYARLMGFH HMHTMSQMQN PAFQEQYARL MGFHHMQTMS QPMNMFRFGS  540
QPMQQNQMTA PTGINSGPLG GGGTANDTLS GKMCKSLHQP LILGHFIDF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	356	361	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43010.2	2e-57	bHLH family protein