PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001239.1_g120.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 209aa MW: 22943.6 Da PI: 9.5856

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001239.1_g120.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.8	3.2e-07	14	34	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 ++f +t Ck+G rCkF+H++ Pav_sc0001239.1_g120.1.mk 14 KYFIKTQRCKFGMRCKFNHPK 34 6999***************96 PP
2	zf-CCCH	27.8	4.2e-09	57	81	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++ G+Ck+G++Ck +H++ Pav_sc0001239.1_g120.1.mk 57 EPPCAFYLKAGQCKFGATCKVHHPK 81 79******************99985 PP
3	zf-CCCH	23.4	1e-07	126	144	1	19
--S---SGGGGTS--TTTT CS zf-CCCH 1 yktelCrffartGtCkyGd 19 +++++C+f+++tG CkyG+ Pav_sc0001239.1_g120.1.mk 126 PGEPNCQFYLKTGSCKYGA 144 5799**************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence
MSSPAFPASN APLKYFIKTQ RCKFGMRCKF NHPKDKLAAA VASENADVFA LPERPAEPPC 60 AFYLKAGQCK FGATCKVHHP KEIQIPSAEQ ENKIGETGTT IQPEGTGFAV KPPALSFNSK 120 EPPVIPGEPN CQFYLKTGSC KYGAIWAQLK RTEKGTMRRS YCCLNHALSA VYNISFGEKK 180 ATQLTTLVLQ LSLPKAQSIN CNFYFIKAG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	2e-42	C3H family protein