PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001240.1_g030.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 1183aa MW: 130339 Da PI: 4.8735

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001240.1_g030.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.3	1.1e-14	925	973	2	50
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqC 50 W ++e++ Li +rre++ ++++k++ +lW+++s+kmre+gf rsp++C Pav_sc0001240.1_g030.1.mk 925 WVQEETRSLIGFRREVDGLFNTSKSNRHLWDQISAKMREKGFDRSPTMC 973 ************************************************* PP

Sequence ? help Back to Top
Protein Sequence Length: 1183 aa Download sequence
MALNLSRGSI LPTYPSSVWY SNGYVMDQYK ENNLDGVCDD SSSSWGFNLD LKNTHWGTEL 60 GGYCDHSADD IVDRLPVDPF GMGIRSTFTA ITGWLQGFEK EHESYGSGLH EAIDGGLLAG 120 FNWAWNSAVM FQPEVCDLRF DGISIPYDSF DGYGINDGGF VLDGNVEEFL SFSDVGNLDF 180 CDGAKELQVE TEEIQGCSIM HPKSEGSAPH DAMFYALSFL GVKDLLSVEK VCRSFRDSVR 240 SDPLIWRSIV IDWPLNEIIT DDVLIKLTDR AQGTLQALTL VHCVHITDSG LQRVFDSNPK 300 LTKLGVPGCL KISVEDILSN LWTLKSAGKP GIKQLRIGGL SGITEMQFEE LKLLLGADNR 360 VQFRAPKPRF FHGGLSHLSC DDDCAIDIEA CPRCQKLSLV YDCPAKSCQG KHRADQMCRA 420 CMLCIARCIS CGCCLQDTDY EETFCLDLLC VVCMKKILKC RHGEKGAPKC AFFCRENRRR 480 AAAIYGGEAE SYGRAVGALI YVVAIAERMA AVKHKILVLS GKGGVGKSTF SAQLAFALAA 540 MDFQVGLLDI DICGPSIPKM LGLEGQEIHQ SNLGWSPVYI ESNLGVMSIG FMLPEPDDAV 600 IWRGPRKNAL IKQFLKDVYW GELDFLVVDA PPGTSDEHIA IVQYLDAGSI DGAIIVTTPQ 660 QVSLIDVRKE VSFCKKVGVQ VLGIVENMSG LCQPVMDFKF LRMTEAGEQI DVTEWAREHL 720 KERAPEFLSI IACTEVFDSS RGGAERMCRE MGVPFLGKVP LDPQLCKAAE EGRSCFVDQK 780 CAALFCLFLF FSLGSAIISY TQMPIHFATT FTLCLDMYLS EKARPVDLYK GGGLGGEEES 840 EREMMMEVVV ANGSAPPHHH HQNQSESQHQ QQMHQMIVGI GENNSSGGEG EEQELCAATS 900 NSIGSRAAGG GGGGPGAPKK RAETWVQEET RSLIGFRREV DGLFNTSKSN RHLWDQISAK 960 MREKGFDRSP TMCLEDSGIP FGPMEATDRS ALNLERQLDH DGDPLAITAA DTVAVSGVPP 1020 WNWREGPGNG GEGHSSYCGK IITVKLGEYT RRIGIDGTAD AIKEAIKSAF RIRTKRAFWL 1080 EDEDQVVRSL DRDMPLGNYT LHLDEGITIK LCLYDDSDRI VRTEEITLYT EDDFRDFLAR 1140 RGLMGLRELS GYRRIDTLDE LQSGAMYQGL VIHRSMAGGV NPC

Sequence ? help Back to Top

Protein Sequence Length: 1183 aa Download sequence

MALNLSRGSI LPTYPSSVWY SNGYVMDQYK ENNLDGVCDD SSSSWGFNLD LKNTHWGTEL  60
GGYCDHSADD IVDRLPVDPF GMGIRSTFTA ITGWLQGFEK EHESYGSGLH EAIDGGLLAG  120
FNWAWNSAVM FQPEVCDLRF DGISIPYDSF DGYGINDGGF VLDGNVEEFL SFSDVGNLDF  180
CDGAKELQVE TEEIQGCSIM HPKSEGSAPH DAMFYALSFL GVKDLLSVEK VCRSFRDSVR  240
SDPLIWRSIV IDWPLNEIIT DDVLIKLTDR AQGTLQALTL VHCVHITDSG LQRVFDSNPK  300
LTKLGVPGCL KISVEDILSN LWTLKSAGKP GIKQLRIGGL SGITEMQFEE LKLLLGADNR  360
VQFRAPKPRF FHGGLSHLSC DDDCAIDIEA CPRCQKLSLV YDCPAKSCQG KHRADQMCRA  420
CMLCIARCIS CGCCLQDTDY EETFCLDLLC VVCMKKILKC RHGEKGAPKC AFFCRENRRR  480
AAAIYGGEAE SYGRAVGALI YVVAIAERMA AVKHKILVLS GKGGVGKSTF SAQLAFALAA  540
MDFQVGLLDI DICGPSIPKM LGLEGQEIHQ SNLGWSPVYI ESNLGVMSIG FMLPEPDDAV  600
IWRGPRKNAL IKQFLKDVYW GELDFLVVDA PPGTSDEHIA IVQYLDAGSI DGAIIVTTPQ  660
QVSLIDVRKE VSFCKKVGVQ VLGIVENMSG LCQPVMDFKF LRMTEAGEQI DVTEWAREHL  720
KERAPEFLSI IACTEVFDSS RGGAERMCRE MGVPFLGKVP LDPQLCKAAE EGRSCFVDQK  780
CAALFCLFLF FSLGSAIISY TQMPIHFATT FTLCLDMYLS EKARPVDLYK GGGLGGEEES  840
EREMMMEVVV ANGSAPPHHH HQNQSESQHQ QQMHQMIVGI GENNSSGGEG EEQELCAATS  900
NSIGSRAAGG GGGGPGAPKK RAETWVQEET RSLIGFRREV DGLFNTSKSN RHLWDQISAK  960
MREKGFDRSP TMCLEDSGIP FGPMEATDRS ALNLERQLDH DGDPLAITAA DTVAVSGVPP  1020
WNWREGPGNG GEGHSSYCGK IITVKLGEYT RRIGIDGTAD AIKEAIKSAF RIRTKRAFWL  1080
EDEDQVVRSL DRDMPLGNYT LHLDEGITIK LCLYDDSDRI VRTEEITLYT EDDFRDFLAR  1140
RGLMGLRELS GYRRIDTLDE LQSGAMYQGL VIHRSMAGGV NPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25990.1	4e-80	Trihelix family protein