PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001263.1_g110.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 206aa    MW: 22864.2 Da    PI: 6.5216
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001263.1_g110.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.9e-19148200254
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+
  Pav_sc0001263.1_g110.1.mk 148 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRAR 200
                                788899**********************************************8 PP
2HD-ZIP_I/II85.28.8e-28148201154
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt 54 
                                +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRAR 
  Pav_sc0001263.1_g110.1.mk 148 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARL 201
                                69***************************************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MMVERDQDLG LSLSLSFPQT HNHNNNSNST TSTLQLNLMP SLVPTSASSP SGFLPQKPSW  60
NEALISSDRH SNYETCRVGP RSFLRGIDVN RLPSTGDCED EAGVSSPNST VSSVSGKRSE  120
REANGEDLDI ERDCSRGISD EEDGETSRKK LRLSKDQSAI LEESFKEHNT LNPKQKLALA  180
KQLGLRPRQV EVWFQNRRAR LGFGGY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147153SRKKLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.17e-43HD-ZIP family protein