PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001280.1_g410.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 248aa    MW: 27500.2 Da    PI: 4.3333
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001280.1_g410.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY54.32.7e-17841212158
                                -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                       WRKY  21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                                +rsYYrCt ++C++kk+vers+edp++++itYeg H h
  Pav_sc0001280.1_g410.1.mk  84 ARSYYRCTNPRCSAKKQVERSSEDPDTLVITYEGLHLH 121
                                6***********************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MEDAMGATWS DGLEEELVRE LLDNETPFFV LPEEALQSQM SVSSEDSVVN RFIPTVYSGP  60
TIRDIETALS VTAGTIQPQE LSPARSYYRC TNPRCSAKKQ VERSSEDPDT LVITYEGLHL  120
HFAYPFFPLN NQAQNISPPM KKPRNKTSQP HAEDREHEAQ ESPRSITPDP DPDLQPSPFP  180
DPHEEFGEKE ASSQGLLQDV VPFMIRNPNP SSASSNSSCS SYRSSPTSPS SLSWATSYFD  240
VGLSHSFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.15e-23WRKY family protein