PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001280.1_g590.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 352aa    MW: 38753.6 Da    PI: 9.2205
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001280.1_g590.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP48.22.9e-1520504878
                               SEEETTT--SS--S-STTTT-------S--- CS
                        SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78
                                fh+l efD++krsCrrrLa+hnerrrk+q+
  Pav_sc0001280.1_g590.1.br 20 VFHQLPEFDQGKRSCRRRLAGHNERRRKPQP 50
                               6***************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    
MPSYAAIPSF KQSYKTGHEV FHQLPEFDQG KRSCRRRLAG HNERRRKPQP GSILSARFGR  60
LSSSIYENSS RVGSFLMDFT AYPRHSGRDA WETTRTSEWV PGNQNSNDTG KFLQHPWQSN  120
SEITPSGLYL QGSAGGTSYP GPGIPPGECV TGVTDSSCAL SLLSSQPWGS RNRVSGVGMN  180
TVVNTQGPPV GQPITHAGTS NHFPTTSWGF KGNAGSSHEM LPDLGLGQIS QPPLSTQYSG  240
VLELSQQSSR RQQQMELGHT RGFDTSSQHI HWSLSNRSLG SPVHMNALLL GLKTLEPFEG  300
FIMFCWVENL NWLCFVVYVL LRLRRSESKV SIQGLKCLPS NEATILDFGI LL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-33SBP family protein