PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001289.1_g020.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 26052.5 Da    PI: 9.2081
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001289.1_g020.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.7e-312574150
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                               krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Pav_sc0001289.1_g020.1.mk 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 74
                               79***********************************************8 PP
2K-box24.61.1e-0914017268100
                      K-box  68 kKnellleqieelqkkekelqeenkaLrkklee 100
                                k+nell+++ie++qk+e +l+++n+ Lr+k++e
  Pav_sc0001289.1_g020.1.mk 140 KQNELLFAEIEYMQKREIDLHNNNQLLRAKIAE 172
                                89****************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MAYENKSMSL DSPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSNRGRL YEYANNSSWF GANIDLAKKA YNTQAVMPPL AQPPISLTLP KYHVSYGHQE  120
ILPTRSCETA RSDREFAELK QNELLFAEIE YMQKREIDLH NNNQLLRAKI AENERSQQNI  180
NVMAGGGSYE IMQSQPYDSR NYFQVNALQP NHQYNSRQDP MALQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-79MIKC_MADS family protein