PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001296.1_g010.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 164aa    MW: 18714.5 Da    PI: 10.4023
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001296.1_g010.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.58.2e-2242130190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 
                                +fYn+YA  +GF +r ++s + ++++ei +++fvC k+g  ++ +++  +++r+r  +r++Ckak++v k++ ++k+ ++ + +
  Pav_sc0001296.1_g010.1.br  42 NFYNRYAFFAGFGIRLHSSFRGTNKKEILRKEFVCCKQGAYRKYETR--ERKRQRGISRCNCKAKIVVVKTNgSKKYAISLFAE 123
                                6**************************************99887766..8999*************9999998*********** PP

                       FAR1  84 eHnHela 90 
                                 HnH+++
  Pav_sc0001296.1_g010.1.br 124 GHNHKMT 130
                                ****986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MSGGSESDDC VTANGMVYIP EVRNEETPAV GMKFDSLDLA YNFYNRYAFF AGFGIRLHSS  60
FRGTNKKEIL RKEFVCCKQG AYRKYETRER KRQRGISRCN CKAKIVVVKT NGSKKYAISL  120
FAEGHNHKMT ASERVHLLRS HRRISDSTKV LTKQLGSVNI PIHQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-21FAR1 family protein