PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001296.1_g360.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Nin-like

Protein Properties

Length: 695aa MW: 76056.6 Da PI: 5.9474

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001296.1_g360.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.4e-29	296	347	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCR++GI+RWP+Rkik++ Pav_sc0001296.1_g360.1.mk 296 AEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRHHGISRWPSRKIKKV 347 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence
MLGTSCNQIQ ICNEGRQTAL TEILEILTVV CETHKLPLAQ TWVPCMHRNV LAYGGGLKKS 60 CTSFDGSCME QVCMSTTDAA FYIVDAPMWH FREACVEHHL QKGQGVAGRA FLSHNACFCR 120 DITQFCKTDY PLVHYARMFK LTSCFAICLQ STHTGNDDYI LEFFLPPSIT DSYEQQTLLG 180 SLLAIIKNHF QSLKVASGII LEEEGLVEMV QASTNKELES RLECIRIPRS AETPPGPTLP 240 NGEEMVQLDS SKPQLMVDFD PANDGSNAVN EGGENNISCP ENKDIRKKSE KKRGKAEKSI 300 SLEVLQQYFA GSLKDAAKSL GVCPTTMKRI CRHHGISRWP SRKIKKVNHS LSKLQRVIES 360 VQGAEGAFGL TSLTASPRSG AVGSISRPYI LNGSNQQSSP RSKPSELHGE KKDSPTPTTP 420 GTEGQAWIEN QLLDGGILQE ELLLEHGRFL LDDGKGSNTS KTGSSSREAS AGTPTSHGSC 480 QGSPANGNAL VNNTFVSSIH GQCIEVNGFP ESAVRPPKEL NLSVACSIPD AVLMTDPEEP 540 CRGMLIEDAG SSKDLKNLCP QADAMVDEQV PEACCTNPPC SDSALKPSNT MPHIIARQEM 600 KSVTIKATYK EDIIRFRISM SSGIVELKDE VAKRLKLEMG TFDIKYMDDD LEWVLIACDV 660 DLQEFMEICR SLGRNMIRLS VHDIMSNFGS SCGSM

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence

MLGTSCNQIQ ICNEGRQTAL TEILEILTVV CETHKLPLAQ TWVPCMHRNV LAYGGGLKKS  60
CTSFDGSCME QVCMSTTDAA FYIVDAPMWH FREACVEHHL QKGQGVAGRA FLSHNACFCR  120
DITQFCKTDY PLVHYARMFK LTSCFAICLQ STHTGNDDYI LEFFLPPSIT DSYEQQTLLG  180
SLLAIIKNHF QSLKVASGII LEEEGLVEMV QASTNKELES RLECIRIPRS AETPPGPTLP  240
NGEEMVQLDS SKPQLMVDFD PANDGSNAVN EGGENNISCP ENKDIRKKSE KKRGKAEKSI  300
SLEVLQQYFA GSLKDAAKSL GVCPTTMKRI CRHHGISRWP SRKIKKVNHS LSKLQRVIES  360
VQGAEGAFGL TSLTASPRSG AVGSISRPYI LNGSNQQSSP RSKPSELHGE KKDSPTPTTP  420
GTEGQAWIEN QLLDGGILQE ELLLEHGRFL LDDGKGSNTS KTGSSSREAS AGTPTSHGSC  480
QGSPANGNAL VNNTFVSSIH GQCIEVNGFP ESAVRPPKEL NLSVACSIPD AVLMTDPEEP  540
CRGMLIEDAG SSKDLKNLCP QADAMVDEQV PEACCTNPPC SDSALKPSNT MPHIIARQEM  600
KSVTIKATYK EDIIRFRISM SSGIVELKDE VAKRLKLEMG TFDIKYMDDD LEWVLIACDV  660
DLQEFMEICR SLGRNMIRLS VHDIMSNFGS SCGSM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	Nin-like family protein