PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001305.1_g720.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 186aa    MW: 20558.4 Da    PI: 9.051
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001305.1_g720.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.5e-12960255
                               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                               r+  + +E++RR++++  +++L +l+P++   +s+   s  + L  Av YIk+Lq
  Pav_sc0001305.1_g720.1.mk  9 RADRKTIEKNRRNQMKALYSKLNSLVPHQ---RSREvTSLPDQLDDAVSYIKKLQ 60
                               677889**********************9...88998*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MEHCPSSSRA DRKTIEKNRR NQMKALYSKL NSLVPHQRSR EVTSLPDQLD DAVSYIKKLQ  60
TNLEKMREKK ESLMGAEKSG NNNAGFVGGG VMGGLKSPQI EIEIQEMGSA LQVVLITGLD  120
YQFMFNESIR VLHEEGADIV NASFSIVEDT IFHTIHSKIG ESAPGPVAAR ISERLKKLVN  180
GRAGSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-49bHLH family protein