PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001305.1_g960.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 804aa MW: 89849 Da PI: 4.5792

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001305.1_g960.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.4	4.9e-08	228	247	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C +G +CkF H Pav_sc0001305.1_g960.1.mk 228 ICDFFAK-GWCIRGTSCKFVH 247 6****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 804 aa Download sequence
MPHDDQSPPP GEVSDSADVE EEEEDPEIEE DEDPEIEEEE DDDDEEDPEI VEEEEEEEEG 60 EENIEEEEEE KEEEEEEEEV EEGEQEEIME EERVEVDMDI SDSPVQARDH HNDVRRDYKP 120 EGLDGIHSNE SHDDGKAYLR HSEVMDAKAA NSSGVAGVEM ADAILMRDHL GKEVKSVMNP 180 EDEMKQGDIH LRNDRKQMDS RSAASEKVTR IMSPVAETSD RNKRPAIICD FFAKGWCIRG 240 TSCKFVHIKD NLNSTHPQGD VAAANCTREI QPDEGLRDIT ERSRSPGFPD PLASSHLSSE 300 KIQFSEHTGI QRRHQSLENH KFPAVPGEES NMGEYAQKLH SSKDDQVFLS SFKDVGRDGH 360 ARNWPVDGYN NSPIHKDNSR FMSGLHPEPG FFSNGSTASS GKYSRGNPTS QSSCMEEPAG 420 IWSQRMHSDH NSPLASLSLN SNSSNLLTNG SFPASRISSW TGFSLPSSYS CLDASPYGTQ 480 KLLDRNRDYR YSTRSSPLLK SSSPFSSSEL KKLPSTSVSL RSDKLQTKIS SNDWEPSVPF 540 RPSFILPPAF LSSSGSQYDP LHDSIELPKL ANISFEASFY SEEAVIGNKL HHQIRGESVS 600 GTMRPACDGD TNSMSSHNTC HEKVLDNSCY TREHNSPVTE AETVGASVVC QNGTMTIEEN 660 LLGPSHLKGN TKPHKTSSYG DSRPQSDSSR HKKDITVDRF RENNEVDGEH VTDGDVQQES 720 KALRHFRAAL VELVKELLKP KWREGCLSKD AHNKIVKKAV EKVLSAFQPH QIPPTVETVV 780 QYLSSCRPKI SKLVEGYVEK YGKS

Sequence ? help Back to Top

Protein Sequence Length: 804 aa Download sequence

MPHDDQSPPP GEVSDSADVE EEEEDPEIEE DEDPEIEEEE DDDDEEDPEI VEEEEEEEEG  60
EENIEEEEEE KEEEEEEEEV EEGEQEEIME EERVEVDMDI SDSPVQARDH HNDVRRDYKP  120
EGLDGIHSNE SHDDGKAYLR HSEVMDAKAA NSSGVAGVEM ADAILMRDHL GKEVKSVMNP  180
EDEMKQGDIH LRNDRKQMDS RSAASEKVTR IMSPVAETSD RNKRPAIICD FFAKGWCIRG  240
TSCKFVHIKD NLNSTHPQGD VAAANCTREI QPDEGLRDIT ERSRSPGFPD PLASSHLSSE  300
KIQFSEHTGI QRRHQSLENH KFPAVPGEES NMGEYAQKLH SSKDDQVFLS SFKDVGRDGH  360
ARNWPVDGYN NSPIHKDNSR FMSGLHPEPG FFSNGSTASS GKYSRGNPTS QSSCMEEPAG  420
IWSQRMHSDH NSPLASLSLN SNSSNLLTNG SFPASRISSW TGFSLPSSYS CLDASPYGTQ  480
KLLDRNRDYR YSTRSSPLLK SSSPFSSSEL KKLPSTSVSL RSDKLQTKIS SNDWEPSVPF  540
RPSFILPPAF LSSSGSQYDP LHDSIELPKL ANISFEASFY SEEAVIGNKL HHQIRGESVS  600
GTMRPACDGD TNSMSSHNTC HEKVLDNSCY TREHNSPVTE AETVGASVVC QNGTMTIEEN  660
LLGPSHLKGN TKPHKTSSYG DSRPQSDSSR HKKDITVDRF RENNEVDGEH VTDGDVQQES  720
KALRHFRAAL VELVKELLKP KWREGCLSKD AHNKIVKKAV EKVLSAFQPH QIPPTVETVV  780
QYLSSCRPKI SKLVEGYVEK YGKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	2e-36	C3H family protein