PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001309.1_g1080.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 473aa MW: 54015.2 Da PI: 6.07

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001309.1_g1080.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.4	1.6e-18	208	254	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd ll+++v+q+G + W+ Ia++++ gR +kqc++rw+++l Pav_sc0001309.1_g1080.1.mk 208 KGQWTIEEDRLLIQLVEQYGVRKWSHIAQMLP-GRIGKQCRERWHNHL 254 799***************************.***********97 PP
2	Myb_DNA-binding	58.2	1.8e-18	260	302	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+ Pav_sc0001309.1_g1080.1.mk 260 KDTWSEEEDKILIQAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 302 679*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MELNKLRENL ASQVPLLVPD NYLMKLYNMK DEFPFEASSS SKGNYNYLQD FHHLDHQFQV 60 NGSSSNPMFG VQNPCFDPYN DTTYTYEAST TDVKFYECKP LNEETNMGHG QVLDNFQSGS 120 GYLNFPTHTS NPLDHLMGSS HRSATNFLPL DYQDIKPMNF VVPDEVSCIN NADQNGYYKK 180 FGMNGKSRVS TLTRGSTYKG RKKSNVVKGQ WTIEEDRLLI QLVEQYGVRK WSHIAQMLPG 240 RIGKQCRERW HNHLRPDIKK DTWSEEEDKI LIQAHAEIGN KWAEIAKRLP GRTENSIKNH 300 WNATKRRQYS KRKCRSKYPR GSLLQEYIKS LNLDSTGSST GRQRKNKSGN NMAASSTKSH 360 TQQTQNNVGF SCANDRLVPN YDFNEDPDFC FDDNMFQEGC SIDSLLDDIP CAPVIGENNG 420 DFDGKIMAQA SVVADEEKDF EMEMQVDVDV GPVMESSEVK KELDLVEMIS QVN

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MELNKLRENL ASQVPLLVPD NYLMKLYNMK DEFPFEASSS SKGNYNYLQD FHHLDHQFQV  60
NGSSSNPMFG VQNPCFDPYN DTTYTYEAST TDVKFYECKP LNEETNMGHG QVLDNFQSGS  120
GYLNFPTHTS NPLDHLMGSS HRSATNFLPL DYQDIKPMNF VVPDEVSCIN NADQNGYYKK  180
FGMNGKSRVS TLTRGSTYKG RKKSNVVKGQ WTIEEDRLLI QLVEQYGVRK WSHIAQMLPG  240
RIGKQCRERW HNHLRPDIKK DTWSEEEDKI LIQAHAEIGN KWAEIAKRLP GRTENSIKNH  300
WNATKRRQYS KRKCRSKYPR GSLLQEYIKS LNLDSTGSST GRQRKNKSGN NMAASSTKSH  360
TQQTQNNVGF SCANDRLVPN YDFNEDPDFC FDDNMFQEGC SIDSLLDDIP CAPVIGENNG  420
DFDGKIMAQA SVVADEEKDF EMEMQVDVDV GPVMESSEVK KELDLVEMIS QVN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	1e-110	MYB family protein