PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001309.1_g700.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 186aa    MW: 20932 Da    PI: 9.7499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001309.1_g700.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.21.9e-101467555
                               HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHHH CS
                        HLH  5 hnerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksLq 55
                                +++Er+RR +++   ++L +l+P+  sk+p+ K  ls    L +A  YIk+L+
  Pav_sc0001309.1_g700.1.mk 14 RKIVERNRRIHMKGLCFKLASLIPSqHSKGPNSKdtLSQQNQLDLASSYIKQLR 67
                               5799*********************888888888899***************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MKKCSGESSS KLDRKIVERN RRIHMKGLCF KLASLIPSQH SKGPNSKDTL SQQNQLDLAS  60
SYIKQLRERI ENLKEMKEKA TRSQLGIDAN STINADNAMM VRSRLPVLEL RDSGSSIEVM  120
LISGLNKNFM LYEVISVLEE EGAEVVSASF STVGDKVFHS LHAQVKFSRV GVETSTVWQR  180
LQDLIY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-30bHLH family protein