PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001309.1_g720.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 186aa    MW: 20996.1 Da    PI: 9.7495
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001309.1_g720.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.1e-101567655
                               HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHHH CS
                        HLH  6 nerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksLq 55
                               + +Er+RR +++   ++L +l+P+  skap+ K  ls    L +A  YIk+L+
  Pav_sc0001309.1_g720.1.mk 15 KTVERNRRIHMKGLCFKLASLIPPqHSKAPNSKdtLSQQNQLDLASSYIKQLR 67
                               679*********************888999999899***************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MKKCSGESSS KLDRKTVERN RRIHMKGLCF KLASLIPPQH SKAPNSKDTL SQQNQLDLAS  60
SYIKQLRERI ENLKERKEKA TRSQLGIDAN STIDADNAMM VRSRLPVIEL RDSGSIIEVM  120
LISGLNKNFM LYEVISVLEE EGAEVVSASF STVGDKVFHS LHAQVKFSRV GVETSTVWQR  180
LQDLIY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.17e-33bHLH family protein