PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001311.1_g030.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 192aa MW: 22489.4 Da PI: 9.4275

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001311.1_g030.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88	1.4e-27	31	120	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fYneY++++GF++r+++++k+k++g+i++r fvC keg+r ++k++ ++++raetrt C+ak+ +k++k +gk+ v+++ + Pav_sc0001311.1_g030.1.br 31 EFYNEYGRRAGFNIRRDSQNKNKNTGQIISRVFVCCKEGFRPKDKQD-YLTKSSRAETRTCCNAKMSIKLNKsNGKYWVSHFME 113 6****************************************9999.9999****************9******* PP FAR1 84 eHnHela 90 HnH+l+ Pav_sc0001311.1_g030.1.br 114 YHNHPLV 120 ***97 PP

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence
MKDSVATIYE DNLDYKPICD MEFLSEQAAY EFYNEYGRRA GFNIRRDSQN KNKNTGQIIS 60 RVFVCCKEGF RPKDKQDYLT KSSRAETRTC CNAKMSIKLN KSNGKYWVSH FMEYHNHPLV 120 RQECTHMLPS HRRISASQAT DVDLTEESGI PLRQAYELMG RQVGGRESLG YIKQDQKNYL 180 RTKRQRKLAY GE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-34	FAR1 family protein