PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001313.1_g070.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 161aa    MW: 18301.8 Da    PI: 8.296
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001313.1_g070.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM721.5e-2291411128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykve.Pwd.LpkkvkaeekewyfFskrdkkyatgkrknratk... 79 
                                lp+Gf+F+P++ el+ +yL +kv+g +l+  +++ e+d+y  e  w+ L    +++e+++yfF++ +kk+a+g+r +r+t+   
  Pav_sc0001313.1_g070.1.mk   9 LPVGFQFEPSEMELLAHYLYNKVNGLPLSS-NAVIECDLYGEEeTWRrLF--DETGETSLYFFTELKKKTAKGSRVERTTSlgg 89 
                                79*************************999.7788999998751444142..34578899******************998533 PP

                        NAM  80 sgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  +W+++ +dk+++ +    +++l+g k+t+ +  +++++  k + vmhe+rl
  Pav_sc0001313.1_g070.1.mk  90 CVTWRNQ-SDKAIYGNdgppNKTLIGYKRTFSYVPKKTSTKAKGEMVMHEFRL 141
                                3359977.6799999888888889**********99999999*********98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    
METARSLGLP VGFQFEPSEM ELLAHYLYNK VNGLPLSSNA VIECDLYGEE ETWRRLFDET  60
GETSLYFFTE LKKKTAKGSR VERTTSLGGC VTWRNQSDKA IYGNDGPPNK TLIGYKRTFS  120
YVPKKTSTKA KGEMVMHEFR LAGCLLNNNN QSCLYLFLNF P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.12e-18NAC family protein