PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001313.1_g380.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 224aa    MW: 25958.3 Da    PI: 6.6386
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001313.1_g380.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.4e-113280555
                               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                  +E++RR++++  +++L +llP +  ++++ ls  +   +A++YIksL+
  Pav_sc0001313.1_g380.1.mk 32 RRVIEKNRRNQMKVLYSKLNSLLPRQ--NSQEPLSLPDQIDEAINYIKSLE 80
                               5689*********************6..26666****************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MGLLAANLEE RDHQIQMDHN QGSQSSSTKV ERRVIEKNRR NQMKVLYSKL NSLLPRQNSQ  60
EPLSLPDQID EAINYIKSLE SKLQKSQEKR DSLKGKRKRS HTACTNFDSM RSSKPPQIQI  120
HEMGSTLEVV LISGLDNYQF MFNEIIRILH DEQADVVHAS LSTLGDSIFH VIRAEMGKSM  180
LDFGAAKITE KLRRFVNGST SDEELQREYL WDFEIYPETI WDQF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18999KRDSLKGKRKR
296101KRKRSH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-39bHLH family protein