PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001323.1_g070.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

M-type_MADS

Protein Properties

Length: 1024aa MW: 114735 Da PI: 6.7675

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001323.1_g070.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	35.3	1.5e-11	858	906	3	50
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeys 50 i+ + nr vtf kR++ ++ K E+ +LC++ ++ +++ s+ k+ ++ Pav_sc0001323.1_g070.1.mk 858 ISHEPNRRVTFKKRKASLFRKLTEITTLCGIIACAVVYDpSDSKMDAWP 906 88899*************************9998777751567788777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1024 aa Download sequence
MNTQLQCVEE RNMLLQKTKP PNFNILFNAI EFSEPLVTFE QPNNSHPMFP QTTPLSQQSS 60 QLCHPNYSLD NVTYTKLVQY STKTGSLVHG KLAHAHMVKT CFKPCLFLLN NLLNMYCKHG 120 ELDSACNLFD KMPKRNVISY NSLISGYTQV GLFDKAMGVF NEARMAGLKL DKFTYAGALC 180 VCGQTCDIEL GKLVHGLIVL SGSGSDVVLT NSLMDMYSKC GRVDHARILF ENSDNVDDVS 240 WNSLIASYAR IGANEETLRT LVKMHQCGFS LNTYTLGSAL KACCQSFDNS ELCGKLLHGY 300 TVKLGLDLDV VVGTALLDMY AKTGDLDDAI QIFKVMPYRN VVMYNAMIAG FLQIDTFSYE 360 HANEMFNLLS QMQRLGVKPS TFTFSIILRA CKSVEAFEYG KQVHTQVCKY DLQGDEFIGS 420 GLIDFYSSLG LFEDALKCFN LTPRLDIVSW TSMVAGYIQN GETESAFDLF YKLLASGKKP 480 DEFIISSMLG ACANLAAARS GEQIQGYAVK AGVGKFTIVQ NSQICMYAKS GDIDSANLTF 540 TETENPDVVS WSVMICSKAQ HGCAREALEL FELMKNCGIA PNHITFLGVL TACSHGGLVE 600 EGLRYFENMK NDYGMTTNVE HCACAVDLLG RAGRLVDAEN FISNSCFEDN PVMWRALLSA 660 CRVYKDTVAA KRVAEKLINL EPQAAASYVL LYNIYNDAGV ELPAQKIREL MTDRGVKKEP 720 GLSWIEVGNK VHSFVSGDQS HQMIQLIYAR LEEMLGKIKK IGCMITSGPE IKDRKVVHYH 780 SEKLAVTFGI ISLPQSAPVE MQLVVCLVEK QLTLELAYQC QHWIISLYIL LERNFRKHPR 840 YFFVFSTMGK NKIKHELISH EPNRRVTFKK RKASLFRKLT EITTLCGIIA CAVVYDPSDS 900 KMDAWPSPQG AFYVLENFKK LPEQRRGQFM MDQKAFLKKN ISRLNAQLER ARFKNQALDA 960 EVLLIEYLEG KNLRDSSRLG SLLALEDQLA KKISFITNRI EFMEGLEPNE VDAEIDSDEM 1020 GDQG

Sequence ? help Back to Top

Protein Sequence Length: 1024 aa Download sequence

MNTQLQCVEE RNMLLQKTKP PNFNILFNAI EFSEPLVTFE QPNNSHPMFP QTTPLSQQSS  60
QLCHPNYSLD NVTYTKLVQY STKTGSLVHG KLAHAHMVKT CFKPCLFLLN NLLNMYCKHG  120
ELDSACNLFD KMPKRNVISY NSLISGYTQV GLFDKAMGVF NEARMAGLKL DKFTYAGALC  180
VCGQTCDIEL GKLVHGLIVL SGSGSDVVLT NSLMDMYSKC GRVDHARILF ENSDNVDDVS  240
WNSLIASYAR IGANEETLRT LVKMHQCGFS LNTYTLGSAL KACCQSFDNS ELCGKLLHGY  300
TVKLGLDLDV VVGTALLDMY AKTGDLDDAI QIFKVMPYRN VVMYNAMIAG FLQIDTFSYE  360
HANEMFNLLS QMQRLGVKPS TFTFSIILRA CKSVEAFEYG KQVHTQVCKY DLQGDEFIGS  420
GLIDFYSSLG LFEDALKCFN LTPRLDIVSW TSMVAGYIQN GETESAFDLF YKLLASGKKP  480
DEFIISSMLG ACANLAAARS GEQIQGYAVK AGVGKFTIVQ NSQICMYAKS GDIDSANLTF  540
TETENPDVVS WSVMICSKAQ HGCAREALEL FELMKNCGIA PNHITFLGVL TACSHGGLVE  600
EGLRYFENMK NDYGMTTNVE HCACAVDLLG RAGRLVDAEN FISNSCFEDN PVMWRALLSA  660
CRVYKDTVAA KRVAEKLINL EPQAAASYVL LYNIYNDAGV ELPAQKIREL MTDRGVKKEP  720
GLSWIEVGNK VHSFVSGDQS HQMIQLIYAR LEEMLGKIKK IGCMITSGPE IKDRKVVHYH  780
SEKLAVTFGI ISLPQSAPVE MQLVVCLVEK QLTLELAYQC QHWIISLYIL LERNFRKHPR  840
YFFVFSTMGK NKIKHELISH EPNRRVTFKK RKASLFRKLT EITTLCGIIA CAVVYDPSDS  900
KMDAWPSPQG AFYVLENFKK LPEQRRGQFM MDQKAFLKKN ISRLNAQLER ARFKNQALDA  960
EVLLIEYLEG KNLRDSSRLG SLLALEDQLA KKISFITNRI EFMEGLEPNE VDAEIDSDEM  1020
GDQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22590.2	4e-25	M-type_MADS family protein