PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001323.1_g1140.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 245aa    MW: 28436.8 Da    PI: 10.1414
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001323.1_g1140.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.51.7e-2142130190
                        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 
                                 +fYn+YA  +GF +r ++s   k+++ei +++fvC k+g  ++++++  +++r++  +r++Ckak++v k++ ++k+ ++ + 
  Pav_sc0001323.1_g1140.1.br  42 NFYNRYAFVAGFGIRLHSSFWGKNKKEILRKEFVCCKQGAYRKDETR--ERKRQQGISRCNCKAKIVVVKTHgSKKYTISLFA 122
                                 6**************************************99998877..8999999***********999999********** PP

                        FAR1  83 leHnHela 90 
                                 + HnH+++
  Pav_sc0001323.1_g1140.1.br 123 EGHNHKMT 130
                                 *****986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MSGGSKSDDC VTANGMVYIP EVRNEETPAV GMKFDSLDLV YNFYNRYAFV AGFGIRLHSS  60
FWGKNKKEIL RKEFVCCKQG AYRKDETRER KRQQGISRCN CKAKIVVVKT HGSKKYTISL  120
FAEGHNHKMT ASERVHLLRS HRRISDSTKV LTKQLGSVNI PIHQKVSIFE VQSEGIDKID  180
FIKKDIYNLE CSVNGKLRNH NVQLATEYFM AEQKKNEAFY FKMAFYHKWS FTFTKLSRMV  240
LEVFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-19FAR1 family protein