PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001323.1_g190.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 227aa    MW: 24494.3 Da    PI: 5.4476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001323.1_g190.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.7e-13163208655
                                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +++Er RR ri +++ +L+el+P+     +k  + a++L +AveY+k Lq
  Pav_sc0001323.1_g190.1.mk 163 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEAVEYVKFLQ 208
                                689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MQRAAGGSSS GGGEVSRGGG LGRFCSAPAT WLEALLEEEE EDPLKPTQCL TELLAENTGA  60
TSVGFGSTTV DPVSYEAAAA AGFLSRQNSS PAEFLGSSTD GSEGYFSGFG IPAHLDFASL  120
SPNSSSPPAN KRVREVKLEE SGLEDAVPCR VRAKRGCATH PRSIAERVRR TRISDRIRKL  180
QELVPNMDKQ TNTADMLDEA VEYVKFLQKQ IQELSEHQRR CKCIAKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-59bHLH family protein