PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001335.1_g560.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 307aa    MW: 33372.8 Da    PI: 4.9724
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001335.1_g560.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY49.49.3e-161081541659
                                TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY  16 kgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                k+s   r+YYrCt++    C ++k+v+rs+edp+v+eitY+g+H+++
  Pav_sc0001335.1_g560.1.mk 108 KDSSRKRGYYRCTHRnaqCCLATKQVQRSDEDPTVFEITYRGRHTCT 154
                                89999*********9876799************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MESCNMHGEK MSLINELAQG RELARQLQIH LNVPSSSHGT RESLVQKIIV SYEKALSLLN  60
SSSSASGGEQ QLPTGHAAIR MIESPPTSLN GSPRSEDSDR EFKDQDNKDS SRKRGYYRCT  120
HRNAQCCLAT KQVQRSDEDP TVFEITYRGR HTCTQASTST TSAPPLPPPQ NSMDIVDPQQ  180
NQQQPQDLLL TIPQGLTVVT EGLDAGDQEL FPYNPLNHNY VGHFSPPFMG PTTSGTQYLS  240
VSEQGFGGGG QSFQGAECEI PEILSSATSA TNSPIAAAAL GFPFGQADQN LYPNFSFDGP  300
GFFPHSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-19WRKY family protein