PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001335.1_g570.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 387aa MW: 42122.2 Da PI: 4.7912

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001335.1_g570.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.1	1.6e-13	121	171	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r++h +Er+RR+++N+ ++ Lr+l+P + k+ + a+i +v+YI++Lq Pav_sc0001335.1_g570.1.mk 121 RMSHITVERNRRKQMNDHLSVLRSLMPCF---YVKRGDQASIIGGVVDYINELQ 171 99************************9...9******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MAMDDHDRPS SDFFQEHEQC YYSDTNCNLA TPGDDLFSIL ESLDDGFGFG GAMEFPPPPA 60 TVALDDEQPP RPFVFSSSSA DQTDLDETNS PPKTKRLKFS ASPASGGTAT TFSDEDGQQT 120 RMSHITVERN RRKQMNDHLS VLRSLMPCFY VKRGDQASII GGVVDYINEL QQVLQSLEAK 180 KQRKAYSEVL SSPRLASSPR PPGPSPPVLS PRKPPLSPRL SLPPISPRTP QPTSPYKPSS 240 ARALQQPPPQ LPASANIISN YLISSPNMPT SSSLELPSPS SSTTSSHVNN NNNIDNLNEL 300 FANSKSAVAQ VEVKFSGPNV LLKTVSPPIP GQALRIISTL EELSLEILDV SITTVDETMI 360 NAFTIKIGIE CQLSAEELAH QIQQTFC

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MAMDDHDRPS SDFFQEHEQC YYSDTNCNLA TPGDDLFSIL ESLDDGFGFG GAMEFPPPPA  60
TVALDDEQPP RPFVFSSSSA DQTDLDETNS PPKTKRLKFS ASPASGGTAT TFSDEDGQQT  120
RMSHITVERN RRKQMNDHLS VLRSLMPCFY VKRGDQASII GGVVDYINEL QQVLQSLEAK  180
KQRKAYSEVL SSPRLASSPR PPGPSPPVLS PRKPPLSPRL SLPPISPRTP QPTSPYKPSS  240
ARALQQPPPQ LPASANIISN YLISSPNMPT SSSLELPSPS SSTTSSHVNN NNNIDNLNEL  300
FANSKSAVAQ VEVKFSGPNV LLKTVSPPIP GQALRIISTL EELSLEILDV SITTVDETMI  360
NAFTIKIGIE CQLSAEELAH QIQQTFC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	132	RMSHITVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53210.1	4e-48	bHLH family protein