PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001338.1_g320.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 244aa    MW: 28139.5 Da    PI: 5.556
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001338.1_g320.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.74.9e-35221132102
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                                Fl k+y ++ed++++++isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv++++         weF +++
  Pav_sc0001338.1_g320.1.mk  22 FLLKTYMLVEDPTTDDVISWNDDGSAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVSTSR---------WEFCNDK 96 
                                9****************************************************************999.........******* PP

                                XXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  86 Fkkgkkellekikrkks 102
                                F+kg+k++l++i+r+k 
  Pav_sc0001338.1_g320.1.mk  97 FRKGEKDQLCDIRRRKA 113
                                **************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MDGVCDQKGL LEYVRKSSPP PFLLKTYMLV EDPTTDDVIS WNDDGSAFVV WQPAEFARDL  60
LPTLFKHSNF SSFVRQLNTY GFRKVSTSRW EFCNDKFRKG EKDQLCDIRR RKAWASKQQP  120
INNIALNQTA QAMPNHDEFD EDQRSNSSTS SSSDYSSLVD ENKRLKQENG VLSSELTSMK  180
RKCKELLDLV AKYGDSTEKE EEENSERVPK LFGVRLEVEG ERERKRKRAE ISESASILLS  240
QECK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.12e-66HSF family protein