PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001341.1_g540.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

WRKY

Protein Properties

Length: 481aa MW: 53345.4 Da PI: 6.6821

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001341.1_g540.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.9	8.6e-33	235	292	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDg+nWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d+++++i+Y+g+Hnh+k Pav_sc0001341.1_g540.1.mk 235 DDGFNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGHITQIVYKGSHNHPK 292 8**************************************.*************85 PP
2	WRKY	53.3	5.5e-17	366	402	23	59
EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 23 sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 sYY+Cts gCpv+k+ver+++d+++v++tYeg+Hnh+ Pav_sc0001341.1_g540.1.mk 366 SYYKCTSVGCPVRKHVERASHDTRAVITTYEGKHNHD 402 9***********************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MTSSFTHLLT SNMNNMDSNI DQERTNWGLS GYSSDLLMDR NGNEIPKFKS LQPPSLPMSP 60 PPVSPSSYLA STPAFSPNDF FSSPMFLSSS NTLQSPTSGA FSSQIFDWMS NSKETQQGME 120 REQKMFSDFS FQPETRPAAT SSSSFNIQAS SNMASVEESL KTEQKPWDFN RISRQAESLT 180 EKTGVKSEFE PLQIIFPEIG TNQTNMQSNG PSGAPKPDSI HSTQSSQFVR EQKSDDGFNW 240 RKYGQKQVKG SENPRSYYKC TYPNCPTKKK VERSLDGHIT QIVYKGSHNH PKPQSTRRST 300 SQSIQGSTYG ISDQSVPTIS NPKIESVTMQ EDSSASIGED EFEQNSPISN SGGAEDENEP 360 EAKRWSYYKC TSVGCPVRKH VERASHDTRA VITTYEGKHN HDVPAARGSG SYSNANRPAS 420 DNGSNNNSNV SMAVRPLALP NHSNLSYLSS LQNTRQPTTE RQSPYTLKML QSEGSYGFPE 480 F

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MTSSFTHLLT SNMNNMDSNI DQERTNWGLS GYSSDLLMDR NGNEIPKFKS LQPPSLPMSP  60
PPVSPSSYLA STPAFSPNDF FSSPMFLSSS NTLQSPTSGA FSSQIFDWMS NSKETQQGME  120
REQKMFSDFS FQPETRPAAT SSSSFNIQAS SNMASVEESL KTEQKPWDFN RISRQAESLT  180
EKTGVKSEFE PLQIIFPEIG TNQTNMQSNG PSGAPKPDSI HSTQSSQFVR EQKSDDGFNW  240
RKYGQKQVKG SENPRSYYKC TYPNCPTKKK VERSLDGHIT QIVYKGSHNH PKPQSTRRST  300
SQSIQGSTYG ISDQSVPTIS NPKIESVTMQ EDSSASIGED EFEQNSPISN SGGAEDENEP  360
EAKRWSYYKC TSVGCPVRKH VERASHDTRA VITTYEGKHN HDVPAARGSG SYSNANRPAS  420
DNGSNNNSNV SMAVRPLALP NHSNLSYLSS LQNTRQPTTE RQSPYTLKML QSEGSYGFPE  480
F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	2e-70	WRKY family protein