PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001342.1_g290.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 63aa    MW: 7107.3 Da    PI: 11.2527
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001342.1_g290.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.18.8e-27959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               +rien + rqvtf+kRr+g++KK +ELSvLCda++ ++ifsstgk++ y+s
  Pav_sc0001342.1_g290.1.mk  9 SRIENRTTRQVTFAKRRAGLIKKTHELSVLCDAQIGLVIFSSTGKMFQYCS 59
                               59***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 63 aa     Download sequence    
MGRGKITISR IENRTTRQVT FAKRRAGLIK KTHELSVLCD AQIGLVIFSS TGKMFQYCSE  60
SSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.39e-30MIKC_MADS family protein