PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001405.1_g1220.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 1502aa MW: 167494 Da PI: 8.7993

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001405.1_g1220.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13	0.00031	151	172	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H Pav_sc0001405.1_g1220.1.mk 151 KCDKCPREFCSSINYRRHIRVH 172 7********************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 1502 aa Download sequence
MLPSHVPLDL FSLYELSHSL STPSELSPFP SLPHHFLAYS RRFSFPPNTP NLPPARFESH 60 RSPEVLSRSL LTPPLMPIAK LKASNTLDAM KSEEGNDSLD TIIRQVAKEP SISFSRAGDS 120 PVPWIQLLHA LDQQELPGWP LHSPIKVQLQ KCDKCPREFC SSINYRRHIR VHHRLKKLDK 180 DSSKNRELLG AFWDKLSPEE AKEAASFKNV TLEEVPGSSI IKALTTHIRK PGFSSMPHIY 240 LKAGSALLDI VQARPSRFPI SSQELFSILD DASEKTFLSG TAMSMQRYIF DGEAGKIGLE 300 SKNLVACTSF LVEQKLVKAW HADKDAEALR LQKLLVEEEE AAQRRQAELM ERKRQKKLRQ 360 KEQKAKDQRH GDKVDVKENI DETREAEPLV ETSSPSATFD SDTTSSDVQA HDSLSLEAFQ 420 LSTADENVDP ESQTEFIHGH TDSVSGPNVE RRMVQGSGCR RAVVARWQVL SKSQRGVPNG 480 FHGGQSSQTS KLSSIQNHGN HRDSRAASSG NKVWSRKPKP EYDGGSLKAG VQKEATEPDQ 540 IKNHEVLIGS ISVNLGNCSQ ENDNLAGVDD DCLLEHQIPK NNAHDKTNKP DLVHSGTNRS 600 TVKLWRPVSR HGTQGPMAIQ NGNRASEIDV VAEKGNSQNP SSENCPRSCV MDGGNDGNGN 660 GFTHLDETGS LRFSSRAAKD FLAQRWKEAI AADHVELVLL QDSEPPRCPD NQNDGEVESS 720 HSLKFKRSIL GNAENRLVNV EGLEVPTAGA AKVKHRTKPE KGLKIKYIPK QSTKMAAATH 780 EDLSLQEEQE QEHERVFKQQ NDDVPASSLK YLNPEKGQTM ETVRKANLIS LWQLNALIVM 840 LVFSASGMVS LQDLAFVLFS IVYIFILSKF SFPTISRDPS QDTPVFNPQS KMVRLGPIFG 900 AVIGLVLPIA YIFDGFLERD KQGIRAAAPH VFLLASQAFV DGVAFSDRFS TPIRVFVPVF 960 FNAKRIFTLV DWVRNEFSEG YGDDYGGGSA SAAARRLSLG RWLAIANLVF WTSDLFGFML 1020 PIYLPRAFKK YYSAKTDDIS LPKEQEHELK QSQDPTSSKL KKARVLPFWQ INALAVIIVL 1080 SASGMVSPGD FAFVLFSYIY IYFLSKFAFP TLPSSKDPQA FNPQNKFLSL YALLGVIIGL 1140 VLPIAYIFEG IMEGDKQGIK AAAPHVFLLA SQVFMDGVVF SDRFSTPIRV FVPVFYNSKR 1200 IFTLVERLKN EFSKEEVYGA SATRLYLGRM LAVANLAFWS LNLFGFLLLK MSGGVGPTCN 1260 DISLPKEQEH EFKEHHDPAS SKLSPRQKPP AQSKPGLFSF RQLNALAVIV VLAASGMVSP 1320 TDFAFVLFSM IYIHFISKVA FPTTLNSPKD PAVFNPQNKI LRLYVLVGAI VGLLLPIAYI 1380 LEGIVEGDKE GISAASPHVF LLASQVFMEG VAFTDRFSTP IRVFVPVFYN SRRIFTIVEW 1440 LRSEFSKEYE EYGGSAKRLY LGRGLAIANM AFWCFNLFGF LLPVYLPRAF KKYYSLQKVK 1500 EY

Sequence ? help Back to Top

Protein Sequence Length: 1502 aa Download sequence

MLPSHVPLDL FSLYELSHSL STPSELSPFP SLPHHFLAYS RRFSFPPNTP NLPPARFESH  60
RSPEVLSRSL LTPPLMPIAK LKASNTLDAM KSEEGNDSLD TIIRQVAKEP SISFSRAGDS  120
PVPWIQLLHA LDQQELPGWP LHSPIKVQLQ KCDKCPREFC SSINYRRHIR VHHRLKKLDK  180
DSSKNRELLG AFWDKLSPEE AKEAASFKNV TLEEVPGSSI IKALTTHIRK PGFSSMPHIY  240
LKAGSALLDI VQARPSRFPI SSQELFSILD DASEKTFLSG TAMSMQRYIF DGEAGKIGLE  300
SKNLVACTSF LVEQKLVKAW HADKDAEALR LQKLLVEEEE AAQRRQAELM ERKRQKKLRQ  360
KEQKAKDQRH GDKVDVKENI DETREAEPLV ETSSPSATFD SDTTSSDVQA HDSLSLEAFQ  420
LSTADENVDP ESQTEFIHGH TDSVSGPNVE RRMVQGSGCR RAVVARWQVL SKSQRGVPNG  480
FHGGQSSQTS KLSSIQNHGN HRDSRAASSG NKVWSRKPKP EYDGGSLKAG VQKEATEPDQ  540
IKNHEVLIGS ISVNLGNCSQ ENDNLAGVDD DCLLEHQIPK NNAHDKTNKP DLVHSGTNRS  600
TVKLWRPVSR HGTQGPMAIQ NGNRASEIDV VAEKGNSQNP SSENCPRSCV MDGGNDGNGN  660
GFTHLDETGS LRFSSRAAKD FLAQRWKEAI AADHVELVLL QDSEPPRCPD NQNDGEVESS  720
HSLKFKRSIL GNAENRLVNV EGLEVPTAGA AKVKHRTKPE KGLKIKYIPK QSTKMAAATH  780
EDLSLQEEQE QEHERVFKQQ NDDVPASSLK YLNPEKGQTM ETVRKANLIS LWQLNALIVM  840
LVFSASGMVS LQDLAFVLFS IVYIFILSKF SFPTISRDPS QDTPVFNPQS KMVRLGPIFG  900
AVIGLVLPIA YIFDGFLERD KQGIRAAAPH VFLLASQAFV DGVAFSDRFS TPIRVFVPVF  960
FNAKRIFTLV DWVRNEFSEG YGDDYGGGSA SAAARRLSLG RWLAIANLVF WTSDLFGFML  1020
PIYLPRAFKK YYSAKTDDIS LPKEQEHELK QSQDPTSSKL KKARVLPFWQ INALAVIIVL  1080
SASGMVSPGD FAFVLFSYIY IYFLSKFAFP TLPSSKDPQA FNPQNKFLSL YALLGVIIGL  1140
VLPIAYIFEG IMEGDKQGIK AAAPHVFLLA SQVFMDGVVF SDRFSTPIRV FVPVFYNSKR  1200
IFTLVERLKN EFSKEEVYGA SATRLYLGRM LAVANLAFWS LNLFGFLLLK MSGGVGPTCN  1260
DISLPKEQEH EFKEHHDPAS SKLSPRQKPP AQSKPGLFSF RQLNALAVIV VLAASGMVSP  1320
TDFAFVLFSM IYIHFISKVA FPTTLNSPKD PAVFNPQNKI LRLYVLVGAI VGLLLPIAYI  1380
LEGIVEGDKE GISAASPHVF LLASQVFMEG VAFTDRFSTP IRVFVPVFYN SRRIFTIVEW  1440
LRSEFSKEYE EYGGSAKRLY LGRGLAIANM AFWCFNLFGF LLPVYLPRAF KKYYSLQKVK  1500
EY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	351	358	ERKRQKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-131	C2H2 family protein