PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001405.1_g300.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24041.4 Da    PI: 8.4712
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001405.1_g300.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.13.2e-30959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krien + rqvtfskRrng+lKKA+ELSvLCda+v+viifs++g+lye+ss
  Pav_sc0001405.1_g300.1.mk  9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAQVSVIIFSQKGRLYEFSS 59
                               79***********************************************96 PP
2K-box72.99.1e-2580169896
                      K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                                +   e+  e+l++e++ + k+ienL+ +qR+llG +L+s+s++eLq++  qLe+s+++iR++K +l+ eq+e+l+ ke+ l ee
  Pav_sc0001405.1_g300.1.mk  80 KiEVEEYVEQLKHESTAMAKKIENLEASQRKLLGHGLDSCSVEELQEITGQLERSVRNIRERKAHLFAEQMEQLRAKERLLLEE 163
                                3356777899************************************************************************** PP

                      K-box  91 nkaLrk 96 
                                n +L++
  Pav_sc0001405.1_g300.1.mk 164 NAKLSE 169
                                ***987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MVRGKIEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AQVSVIIFSQ KGRLYEFSSS  60
DMQDTIKRYH KHAKAGQTNK IEVEEYVEQL KHESTAMAKK IENLEASQRK LLGHGLDSCS  120
VEELQEITGQ LERSVRNIRE RKAHLFAEQM EQLRAKERLL LEENAKLSEE PRLQQLSVEE  180
KGAVSYWSQS SLSSEVETEL FIGPPITRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.33e-83MIKC_MADS family protein