PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001422.1_g020.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 260aa    MW: 28068.2 Da    PI: 6.1549
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001422.1_g020.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000531521891254
                                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                R +++ ++++ L++l+ +      +K + a++L +A+ YI+ L
  Pav_sc0001422.1_g020.1.mk 152 RKEKLGERIAALQQLVSPF-----GKTDTASVLHEAMGYIRFL 189
                                77788899********998.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MAENDGLEGD HLAVTEGTSF SQLLFAADEV CGLGMDDETF NYTHSSAYST QIKPPKMLCF  60
GNYDHCHGDG LEIGFSETAK KSGVTCSDSS SVSSTSNISI NALPKSNNKR INGLGQESVQ  120
CASTISTTTI ASQRTSKKTK SENPTSTGNA KRKEKLGERI AALQQLVSPF GKTDTASVLH  180
EAMGYIRFLH DQVQVLCSPY LQRLPSLPDG EMEEARKDLR SRGLCLAPVE YTMHVANNNG  240
ADFWSPAMAN NNNNVSSSIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.18e-45bHLH family protein