PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001461.1_g460.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

WOX

Protein Properties

Length: 220aa MW: 25412.5 Da PI: 5.1414

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001461.1_g460.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.3	8.6e-21	102	162	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql+ Le+ Fe+ + +p +++++e++++l +++e++V++WFqNrRa+ k+ Pav_sc0001461.1_g460.1.mk 102 RQRWTPTPVQLQMLERIFEEgTGTPCKQKIKEITMELtqhgQISETNVYNWFQNRRARSKR 162 89***************99************************************97 PP
2	Wus_type_Homeobox	100.9	9.2e-33	101	164	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q+++Le+++++G+ tP k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Pav_sc0001461.1_g460.1.mk 101 ARQRWTPTPVQLQMLERIFEEGTGTPCKQKIKEITMELTQHGQISETNVYNWFQNRRARSKRKQ 164 789***********************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MMEWQQQQQQ QQQIQNQQQI IHHLQNPEDG IGNGNGGLYV KVMTDEQMEL LRRQIAVYAT 60 ICEQLVEMHK AVTAQQDLTG MRLGNFYCDP FMASGGHKIT ARQRWTPTPV QLQMLERIFE 120 EGTGTPCKQK IKEITMELTQ HGQISETNVY NWFQNRRARS KRKQSVPAQN NGESEAEPEV 180 ESPRDEKTKP EDIMSLDNSA PRAENMYLQS PELGFGNFDW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	164	RRARSKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	9e-75	WOX family protein