PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001472.1_g070.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 188aa MW: 20447.7 Da PI: 7.3043

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001472.1_g070.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	54	4.7e-17	2	52	50	100
DUF260 50 peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++++reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l +k+e Pav_sc0001472.1_g070.1.mk 2 HPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQMDLTCAKSE 52 799******************************************999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence
LHPHQREDAV NSLAYEADMR LRDPVYGCVG VISLLQHQLR QLQMDLTCAK SELSKYQNLQ 60 HGLTASHGLI AAAAAAAAAH THHPLHLQSS SSALHNNNNN NLGMGINLIS GGGGGRDHYP 120 HQFFPRDRDH QHQQQMMIRS FDAGNSYDAS LLAMNVSAAA GGIHGQLTHQ FQQPRAAAGD 180 DRRTIDPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	1e-37	LBD family protein