PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001479.1_g120.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 165aa MW: 18788.6 Da PI: 7.8027

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001479.1_g120.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00072	19	41	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s k + +H+ tH Pav_sc0001479.1_g120.1.mk 19 YYCEYCGICRSKKTLIASHMLTH 41 89********************6 PP
2	zf-C2H2	22.1	3.9e-07	63	84	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +Lk+H+++H Pav_sc0001479.1_g120.1.mk 63 TCQECGATFKKPAYLKQHMQSH 84 6*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence
MGIGEAEEEG PIFRDIRQYY CEYCGICRSK KTLIASHMLT HHKEEMEMAK EADGKGEREK 60 SNTCQECGAT FKKPAYLKQH MQSHSLELDS VEAFCSEPGC MKYFSNQKCL KAHIQSCHQH 120 ITCEICGTKK LKRNIERHLC MHEGGGASVE RIKCSYKGCL HTFST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.1	9e-37	C2H2 family protein