PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001518.1_g630.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family SRS
Protein Properties Length: 232aa    MW: 25840 Da    PI: 8.5072
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001518.1_g630.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702199.51e-61141585154
                     DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalss 88 
                                +++CqdCGnqakk+C+++RCRtCCks+gf+C+thvkstWvp+++rr++q  +aa  s++  + ++++ +++++     +  +++
  Pav_sc0001518.1_g630.1.mk  14 ASRCQDCGNQAKKECVYMRCRTCCKSKGFHCQTHVKSTWVPVYRRRHQQLPAAAILSQQHVQLHHEQGHHHQN----PKRPAEH 93 
                                569********************************************76666666555555555544444443....3334444 PP

                     DUF702  89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                                 + +s++++   +  ++P+ev+s+a f+cvrvssv+d  ++ aYqt+v igGhvfkGiLydqG+++
  Pav_sc0001518.1_g630.1.mk  94 LTNPSSSTRL-DQEVNFPAEVNSMATFKCVRVSSVEDMVDQHAYQTSVVIGGHVFKGILYDQGPDH 158
                                4445555554.44556************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MVKQGGGEGG VIMASRCQDC GNQAKKECVY MRCRTCCKSK GFHCQTHVKS TWVPVYRRRH  60
QQLPAAAILS QQHVQLHHEQ GHHHQNPKRP AEHLTNPSSS TRLDQEVNFP AEVNSMATFK  120
CVRVSSVEDM VDQHAYQTSV VIGGHVFKGI LYDQGPDHHH QNCYTTVGQS SSSHHLLLNK  180
KTSNFINAAE NTASTSSAPD PADQVPHHHP SSYPLIPFNA FMPGTQFFIN PK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.13e-49SRS family protein