PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001519.1_g020.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 432aa MW: 46546.6 Da PI: 5.831

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001519.1_g020.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.3e-10	274	322	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + +k Ka +L + ++Y++sLq Pav_sc0001519.1_g020.1.mk 274 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 322 58************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence
MGGHDSEDGG FQHRNEGSLN CPSSGMSTNP LPEKVSQMTM SSVSMFKPSN GADPFFGSGW 60 DPIVSLSQSD NFGGSSVVSH REFSNPPYPV ALENPGMSST SHLVQYPSDS SYVDMVPKLP 120 CFGSGSFSEM VGSFGLSECA QIGNPGCAAN YNPNREGGTE RTSTIGAQSH DDRQISEEGA 180 LGSSPNGKRR KRVPESNSAF SPNKNAEGEI NKDLSGESSD YLKEQDEKKA KVEDNTAANL 240 RGKQMGKQAK ESSQSGDPKD SYIHVRARRG QATNSHSLAE RVRREKISER MRLLQELVPG 300 CNKITGKAVM LDEIINYVQS LQQQVEFLSM KLATVNPELN IDIERILSKD ILNSRSGSGA 360 IFGFSPGISS SHPYPHGMFP GNLPSMPSSA PQFPSLPPTV LDSELQGLFH MGFDSSSAID 420 NLGQNGRLKS EL

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence

MGGHDSEDGG FQHRNEGSLN CPSSGMSTNP LPEKVSQMTM SSVSMFKPSN GADPFFGSGW  60
DPIVSLSQSD NFGGSSVVSH REFSNPPYPV ALENPGMSST SHLVQYPSDS SYVDMVPKLP  120
CFGSGSFSEM VGSFGLSECA QIGNPGCAAN YNPNREGGTE RTSTIGAQSH DDRQISEEGA  180
LGSSPNGKRR KRVPESNSAF SPNKNAEGEI NKDLSGESSD YLKEQDEKKA KVEDNTAANL  240
RGKQMGKQAK ESSQSGDPKD SYIHVRARRG QATNSHSLAE RVRREKISER MRLLQELVPG  300
CNKITGKAVM LDEIINYVQS LQQQVEFLSM KLATVNPELN IDIERILSKD ILNSRSGSGA  360
IFGFSPGISS SHPYPHGMFP GNLPSMPSSA PQFPSLPPTV LDSELQGLFH MGFDSSSAID  420
NLGQNGRLKS EL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	4e-92	bHLH family protein