PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001528.1_g030.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 117aa    MW: 13871.6 Da    PI: 7.4353
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001528.1_g030.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-051233323
                               ETTTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                               C +C+ +F++  +L  Hi+  H
  Pav_sc0001528.1_g030.1.mk 12 CDYCDIPFNNYAQLLEHIKDnH 33
                               ******************9777 PP
2zf-C2H213.30.0002588107219
                                EET..TTTEEESSHHHHHHH CS
                    zf-C2H2   2 kCp..dCgksFsrksnLkrH 19 
                                +C+  +C + Fs++s+++ H
  Pav_sc0001528.1_g030.1.mk  88 VCKkpKCRRKFSNRSEFEDH 107
                                69999*************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    
MNYQFDEDSI FCDYCDIPFN NYAQLLEHIK DNHTWAPEVK DEDVGRGEII TCNLCSDRNM  60
NSKEFENNKG LIHHQQMVHR GSKSKFIVCK KPKCRRKFSN RSEFEDHEPR CSKNLKA