PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001529.1_g070.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NF-YB
Protein Properties Length: 158aa    MW: 18095.5 Da    PI: 9.9172
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001529.1_g070.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB129.41.2e-4017912397
                      NF-YB 23 anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                                nakiskdaket qecvsefisf+t++asdkc+rekrktingddllw ++tlGf+dyveplk+yl k+re+ege+
  Pav_sc0001529.1_g070.1.br 17 RNAKISKDAKETAQECVSEFISFITGQASDKCRREKRKTINGDDLLWVMTTLGFKDYVEPLKIYLDKFREMEGER 91
                               69***********************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    
MKKGFPGKAT PRFQKTRNAK ISKDAKETAQ ECVSEFISFI TGQASDKCRR EKRKTINGDD  60
LLWVMTTLGF KDYVEPLKIY LDKFREMEGE RTAGTGMARQ LLHADHHPHE YHDQRQREQL  120
QHLHAPGMNM YGGMMIDGSS TSSSSSRSRA SSLSLWIW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.13e-46NF-YB family protein