PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001540.1_g330.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 246aa    MW: 27114.6 Da    PI: 6.5148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001540.1_g330.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.3e-2056105255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa a+++a+++++g
  Pav_sc0001540.1_g330.1.mk  56 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEDAAIAYDNAALRFKG 105
                                7********.**********94....45***********************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MSAMVSALTQ VIGTTEDHHQ GTVVQSNPSS ISHSIVKEEP DRPQAVQDQE TVRRRHYRGV  60
RQRPWGKWAA EIRDPKKAAR VWLGTFETAE DAAIAYDNAA LRFKGTKAKL NFPERVQGKT  120
DFGMLMATSG STRTTSSSSA STQQNQNFTG PAGGGVVAHP PAAPLMAPQP ETFPDLYQYA  180
QLLSGNDTDF SYHSSNLFNH PDPFGSQISS PTTHFSSSNA SQPPQRQQQD DQDEDVKDWN  240
WNNPSQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.13e-28ERF family protein